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1

Meta-Analysis of Pathway Enrichment: Combining Independent and Dependent Omics Data Sets

Kaever, Alexander, Landesfeind, Manuel, Feussner, Kirstin, Morgenstern, Burkhard, Feussner, Ivo, Meinicke, Peter, Gill, Andrew C.

Journal:

Year:

2014

Language:

english

File:

PDF, 1023 KB

english, 2014

2

MarVis: a tool for clustering and visualization of metabolic biomarkers

Alexander Kaever, Thomas Lingner, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Peter Meinicke

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 500 KB

english, 2009

3

Predicting phenotypic traits of prokaryotes from protein domain frequencies

Thomas Lingner, Stefanie Mühlhausen, Toni Gabaldón, Cedric Notredame, Peter Meinicke

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 353 KB

english, 2010

4

Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites

Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 338 KB

english, 2004

5

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models

Stephan Waack, Oliver Keller, Roman Asper, Thomas Brodag, Carsten Damm, Wolfgang Florian Fricke, Katharina Surovcik, Peter Meinicke, Rainer Merkl

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 455 KB

english, 2006

6

An unsupervised classification scheme for improving predictions of prokaryotic TIS

Maike Tech, Peter Meinicke

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 314 KB

english, 2006

7

Gene prediction in metagenomic fragments: A large scale machine learning approach

Katharina J Hoff, Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, Peter Meinicke

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 441 KB

english, 2008

8

Word correlation matrices for protein sequence analysis and remote homology detection

Thomas Lingner, Peter Meinicke

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 343 KB

english, 2008

9

UFO: a web server for ultra-fast functional profiling of whole genome protein sequences

Journal:

Year:

2009

Language:

english

File:

PDF, 784 KB

english, 2009

10

Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps

Peter Meinicke, Thomas Lingner, Alexander Kaever…

Journal:

Algorithms for Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.30 MB

english, 2008

11

P-value based visualization of codon usage data

Peter Meinicke, Thomas Brodag, Wolfgang Florian Fricke…

Journal:

Algorithms for Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.81 MB

english, 2006

12

Land Use Type Significantly Affects Microbial Gene Transcription in Soil

Nacke, Heiko, Fischer, Christiane, Thürmer, Andrea, Meinicke, Peter, Daniel, Rolf

Journal:

Microbial Ecology

Year:

2014

Language:

english

File:

PDF, 717 KB

english, 2014

13

Verticillium dahliae VdTHI4, involved in thiazole biosynthesis, stress response and DNA repair functions, is required for vascular disease induction in tomato

Hoppenau, Clara E., Tran, Van-Tuan, Kusch, Harald, Aßhauer, Kathrin P., Landesfeind, Manuel, Meinicke, Peter, Popova, Blagovesta, Braus-Stromeyer, Susanna A., Braus, Gerhard H.

Journal:

Environmental and Experimental Botany

Year:

2014

Language:

english

File:

PDF, 1.97 MB

english, 2014

14

Metabolic priming by a secreted fungal effector

Djamei, Armin, Schipper, Kerstin, Rabe, Franziska, Ghosh, Anupama, Vincon, Volker, Kahnt, Jörg, Osorio, Sonia, Tohge, Takayuki, Fernie, Alisdair R., Feussner, Ivo, Feussner, Kirstin, Meinicke, Peter,

Journal:

Year:

2011

Language:

english

File:

PDF, 876 KB

english, 2011

15

MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data

Kaever, Alexander, Landesfeind, Manuel, Feussner, Kirstin, Mosblech, Alina, Heilmann, Ingo, Morgenstern, Burkhard, Feussner, Ivo, Meinicke, Peter

Journal:

Year:

2015

Language:

english

File:

PDF, 1.32 MB

english, 2015

16

Gradient-Based Optimization of Kernel-Target Alignment for Sequence Kernels Applied to Bacterial Gene Start Detection

Igel, Christian, Glasmachers, Tobias, Mersch, Britta, Pfeifer, Nico, Meinicke, Peter

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 647 KB

english, 2007

17

EVOLUTIONARY OPTIMIZATION OF SEQUENCE KERNELS FOR DETECTION OF BACTERIAL GENE STARTS

MERSCH, BRITTA, GLASMACHERS, TOBIAS, MEINICKE, PETER, IGEL, CHRISTIAN

Journal:

International Journal of Neural Systems

Year:

2007

Language:

english

File:

PDF, 325 KB

english, 2007

18

Predicting the functional repertoire of an organism from unassembled RNA–seq data

Landesfeind, Manuel, Meinicke, Peter

Journal:

Year:

2014

Language:

english

File:

PDF, 688 KB

english, 2014

19

Improving Hidden Markov Models for Classification of Human Immunodeficiency Virus-1 Subtypes through Linear Classifier Learning

Bulla, Ingo, Schultz, Anne-Kathrin, Meinicke, Peter

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 366 KB

english, 2012

20

MarVis-Filter: Ranking, Filtering, Adduct and Isotope Correction of Mass Spectrometry Data

Kaever, Alexander, Landesfeind, Manuel, Possienke, Mareike, Feussner, Kirstin, Feussner, Ivo, Meinicke, Peter

Journal:

Journal of Biomedicine and Biotechnology

Year:

2012

Language:

english

File:

PDF, 693 KB

english, 2012

21

Resolution-Based Complexity Control for Gaussian Mixture Models

Meinicke, Peter, Ritter, Helge

Journal:

Neural Computation

Year:

2001

File:

PDF, 1.42 MB

2001

22

Exploring Neighborhoods in the Metagenome Universe

Aßhauer, Kathrin, Klingenberg, Heiner, Lingner, Thomas, Meinicke, Peter

Journal:

International Journal of Molecular Sciences

Year:

2014

Language:

english

File:

PDF, 1.22 MB

english, 2014

23

Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses

Thomas Lingner, Amr R. Kataya, Gerardo E. Antonicelli, Aline Benichou, Kjersti Nilssen, Xiong-Yan Chen, Tanja Siemsen, Burkhard Morgenstern, Peter Meinicke and Sigrun Reumann

Journal:

Year:

2011

Language:

english

File:

PDF, 3.03 MB

english, 2011

24

On splice site prediction using weight array models: a comparison of smoothing techniques

Taher, Leila, Meinicke, Peter, Morgenstern, Burkhard

Journal:

Journal of Physics Conference Series

Year:

2007

Language:

english

File:

PDF, 756 KB

english, 2007

25

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

Wemheuer, Franziska, Taylor, Jessica A., Daniel, Rolf, Johnston, Emma, Meinicke, Peter, Thomas, Torsten, Wemheuer, Bernd

Journal:

Environmental Microbiome

Year:

2020

File:

PDF, 1.52 MB

2020

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